0.3.10 ow

.woodpecker.yml

@@ -1,16 +1,17 @@
 steps:
-  publish-container:
+  build_and_release:
-    image: taywee/woodpecker-buildah:amd64
+    image: maltegrosse/woodpecker-buildah:0.0.12
-    pull: true
     environment:
      - CONDA_CUDA_OVERRIDE=11.2
      - NVIDIA_VISIBLE_DEVICES=all
     settings:
       registry: git.sandbox.iuk.hdm-stuttgart.de
-      repo: grosse/jupyterlab-datascience-gpu
+      repository: grosse/jupyterlab-datascience-gpu
-      cache: false
+      tag: 4.0.x-gpu-ollama-f-0.3.3
-      tag: git.sandbox.iuk.hdm-stuttgart.de/grosse/jupyterlab-datascience-gpu:test
+      architectures: amd64
       context: Dockerfile
+      loglevel: debug
+      imagename: jupyterlab-datascience
       username:
         from_secret: docker_username
       password:

Dockerfile

@@ -1,183 +1,14 @@
-FROM python:3.10.8-slim-bullseye
+FROM git.sandbox.iuk.hdm-stuttgart.de/grosse/jupyterlab-datascience:4.0.12f
-# debian:bullseye-20230109-slim
+
 ARG NB_USER="jovyan"
 ARG NB_UID="1000"
 ARG NB_GID="100"
-
+ENV CONDA_CUDA_OVERRIDE="12.1"  
-RUN apt-get update --yes && \
-    # - apt-get upgrade is run to patch known vulnerabilities in apt-get packages as
-    #   the ubuntu base image is rebuilt too seldom sometimes (less than once a month)
-    apt-get upgrade --yes && \
-    apt-get install --yes --no-install-recommends \
-    # - bzip2 is necessary to extract the micromamba executable.
-    bzip2 \
-    ca-certificates \
-    ffmpeg  \
-    git \
-    git-lfs \
-    locales \
-    curl \
-    libportaudio2  \
-    dnsutils \
-    sudo \
-    nano \
-    build-essential \
-    tini \
-    wget && \
-    apt-get clean && rm -rf /var/lib/apt/lists/* && \
-    echo "en_US.UTF-8 UTF-8" > /etc/locale.gen && \
-    locale-gen
-
-
-# Configure environment
-ENV CONDA_DIR=/opt/conda \
-    SHELL=/bin/bash \
-    NB_USER="${NB_USER}" \
-    NB_UID=${NB_UID} \
-    NB_GID=${NB_GID} \
-    LC_ALL=en_US.UTF-8 \
-    LANG=en_US.UTF-8 \
-    LANGUAGE=en_US.UTF-8
-ENV PATH="${CONDA_DIR}/bin:${PATH}" \
-    HOME="/home/${NB_USER}"
-
-# Copy a script that we will use to correct permissions after running certain commands
-COPY fix-permissions /usr/local/bin/fix-permissions
-RUN chmod a+rx /usr/local/bin/fix-permissions
-
-# Enable prompt color in the skeleton .bashrc before creating the default NB_USER
-# hadolint ignore=SC2016
-RUN sed -i 's/^#force_color_prompt=yes/force_color_prompt=yes/' /etc/skel/.bashrc && \
-   # Add call to conda init script see https://stackoverflow.com/a/58081608/4413446
-   echo 'eval "$(command conda shell.bash hook 2> /dev/null)"' >> /etc/skel/.bashrc
-
-# Create NB_USER with name jovyan user with UID=1000 and in the 'users' group
-# and make sure these dirs are writable by the `users` group.
-RUN echo "auth requisite pam_deny.so" >> /etc/pam.d/su && \
-    sed -i.bak -e 's/^%admin/#%admin/' /etc/sudoers && \
-    sed -i.bak -e 's/^%sudo/#%sudo/' /etc/sudoers && \
-    useradd -l -m -s /bin/bash -N -u "${NB_UID}" "${NB_USER}" && \
-    mkdir -p "${CONDA_DIR}" && \
-    chown "${NB_USER}:${NB_GID}" "${CONDA_DIR}" && \
-    chmod g+w /etc/passwd && \
-    fix-permissions "${HOME}" && \
-    fix-permissions "${CONDA_DIR}"
-
-USER ${NB_UID}
-
-# Pin python version here, or set it to "default"
-ARG PYTHON_VERSION=3.10
-
-# Setup work directory for backward-compatibility
-RUN mkdir "/home/${NB_USER}/work" && \
-    fix-permissions "/home/${NB_USER}"
-
-COPY --chown="${NB_UID}:${NB_GID}" initial-condarc "${CONDA_DIR}/.condarc"
-WORKDIR /tmp
-RUN set -x && \
-    arch=$(uname -m) && \
-    if [ "${arch}" = "x86_64" ]; then \
-        # Should be simpler, see <https://github.com/mamba-org/mamba/issues/1437>
-        arch="64"; \
-    fi && \
-    wget -qO /tmp/micromamba.tar.bz2 \
-        "https://micromamba.snakepit.net/api/micromamba/linux-${arch}/latest" && \
-    tar -xvjf /tmp/micromamba.tar.bz2 --strip-components=1 bin/micromamba && \
-    rm /tmp/micromamba.tar.bz2 && \
-    PYTHON_SPECIFIER="python=${PYTHON_VERSION}" && \
-    if [[ "${PYTHON_VERSION}" == "default" ]]; then PYTHON_SPECIFIER="python"; fi && \
-    # Install the packages
-    ./micromamba install \
-        --root-prefix="${CONDA_DIR}" \
-        --prefix="${CONDA_DIR}" \
-        --yes \
-        "${PYTHON_SPECIFIER}" \
-        'mamba' \
-        'jupyter_core' && \
-    rm micromamba && \
-    # Pin major.minor version of python
-    mamba list python | grep '^python ' | tr -s ' ' | cut -d ' ' -f 1,2 >> "${CONDA_DIR}/conda-meta/pinned" && \
-    mamba clean --all -f -y && \
-    fix-permissions "${CONDA_DIR}" && \
-    fix-permissions "/home/${NB_USER}"
-
-#RUN conda update --all --yes
-#RUN conda install -c conda-forge tensorflow-gpu=2.11 -y 
-
-#RUN CONDA_CUDA_OVERRIDE="11.2" mamba install --yes -c conda-forge tensorflow==2.10.0=cuda112py310*
-ENV CONDA_CUDA_OVERRIDE="11.2"  
 ENV NUM_GPUS=1
-#RUN mamba install -y tensorflow cudatoolkit>=11.2 -c conda-forge
-#==2.11.0=cuda*
-#RUN mamba install -y -c conda-forge tensorflow-gpu
-RUN CONDA_OVERRIDE_CUDA="11.2" conda install tensorflow-gpu==2.11.0 -c conda-forge
-RUN CONDA_OVERRIDE_CUDA="11.2" conda install -c conda-forge pytorch-gpu
-WORKDIR /tmp
-RUN mamba install --quiet --yes \
-    'notebook==6.4.12' \
-    'jupyterhub==2.3.1' \
-    'mathjax' \
-    'voila==0.3.7' \
-    'jupyterlab-git' \
-    'numba' \
-    'cython' \
-    'matplotlib' \
-    'pandas' \
-    'scipy' \
-    'scikit-image' \
-    'scikit-learn' \
-    'jupyterlab==3.4.3' \
-    'ipywebrtc' && \
-    jupyter notebook --generate-config && \
-    mamba clean --all -f -y && \
-  #  npm cache clean --force && \
-    jupyter lab clean && \
-    rm -rf "/home/${NB_USER}/.cache/yarn" && \
-    fix-permissions "${CONDA_DIR}" && \
-    fix-permissions "/home/${NB_USER}"
-
-ENV JUPYTER_PORT=8888
-EXPOSE $JUPYTER_PORT
-
-
-
-#RUN pip install ipywidgets voila jupyter-collaboration mathjax
-RUN pip install --extra-index-url https://git.sandbox.iuk.hdm-stuttgart.de/api/packages/grosse/pypi/simple jupyterlab-sandbox-theme
-#RUN pip install --extra-index-url https://git.sandbox.iuk.hdm-stuttgart.de/api/packages/grosse/pypi/simple jupyterlab-data-pool
-#RUN pip install --extra-index-url https://git.sandbox.iuk.hdm-stuttgart.de/api/packages/grosse/pypi/simple jupyterlab-training
-#RUN pip install --extra-index-url https://git.sandbox.iuk.hdm-stuttgart.de/api/packages/grosse/pypi/simple jupyterlab-synthetic-data
-RUN pip install --extra-index-url https://git.sandbox.iuk.hdm-stuttgart.de/api/packages/grosse/pypi/simple jupyterlab-sandbox-announcement
-RUN pip install sounddevice wavio
-RUN pip install torch==1.13.1+cu116 torchvision==0.14.1+cu116 torchaudio==0.13.1 --extra-index-url https://download.pytorch.org/whl/cu116
-RUN pip install opencv-python-headless
-# Configure container startup
-CMD ["start-notebook.sh"]
-
-# Copy local files as late as possible to avoid cache busting
-COPY start-notebook.sh start-singleuser.sh /usr/local/bin/
-# Currently need to have both jupyter_notebook_config and jupyter_server_config to support classic and lab
-COPY jupyter_server_config.py /etc/jupyter/
-
-# Fix permissions on /etc/jupyter as root
 USER root
-
+RUN curl -fsSL https://ollama.com/install.sh | sh
-RUN echo 'export PATH=/opt/conda/bin:$PATH' >> /etc/profile
+RUN pip install git+https://git.sandbox.iuk.hdm-stuttgart.de/grosse/jupyterlab_ollama_launcher
-#RUN source /etc/profile
+USER $NB_UID
-
+ENV OLLAMA_MODELS=/tmp/.ollama
-# Legacy for Jupyter Notebook Server, see: [#1205](https://github.com/jupyter/docker-stacks/issues/1205)
+ENV PGPT_PROFILES=ollama
-RUN sed -re "s/c.ServerApp/c.NotebookApp/g" \
+RUN pip install open-webui==0.3.10
-    /etc/jupyter/jupyter_server_config.py > /etc/jupyter/jupyter_notebook_config.py && \
-    fix-permissions /etc/jupyter/
-
-# HEALTHCHECK documentation: https://docs.docker.com/engine/reference/builder/#healthcheck
-# This healtcheck works well for `lab`, `notebook`, `nbclassic`, `server` and `retro` jupyter commands
-# https://github.com/jupyter/docker-stacks/issues/915#issuecomment-1068528799
-HEALTHCHECK  --interval=5s --timeout=3s --start-period=5s --retries=3 \
-    CMD wget -O- --no-verbose --tries=1 --no-check-certificate \
-    http${GEN_CERT:+s}://localhost:${JUPYTER_PORT}${JUPYTERHUB_SERVICE_PREFIX:-/}api || exit 1
-
-# Switch back to jovyan to avoid accidental container runs as root
-USER ${NB_UID}
-RUN jupyter labextension disable "@jupyterlab/apputils-extension:announcements"
-#USER root
-WORKDIR "${HOME}"

fix-permissions

@@ -1,35 +0,0 @@
-#!/bin/bash
-# set permissions on a directory
-# after any installation, if a directory needs to be (human) user-writable,
-# run this script on it.
-# It will make everything in the directory owned by the group ${NB_GID}
-# and writable by that group.
-# Deployments that want to set a specific user id can preserve permissions
-# by adding the `--group-add users` line to `docker run`.
-
-# uses find to avoid touching files that already have the right permissions,
-# which would cause massive image explosion
-
-# right permissions are:
-# group=${NB_GID}
-# AND permissions include group rwX (directory-execute)
-# AND directories have setuid,setgid bits set
-
-set -e
-
-for d in "$@"; do
-    find "${d}" \
-        ! \( \
-            -group "${NB_GID}" \
-            -a -perm -g+rwX \
-        \) \
-        -exec chgrp "${NB_GID}" {} \; \
-        -exec chmod g+rwX {} \;
-    # setuid, setgid *on directories only*
-    find "${d}" \
-        \( \
-            -type d \
-            -a ! -perm -6000 \
-        \) \
-        -exec chmod +6000 {} \;
-done

initial-condarc

@@ -1,6 +0,0 @@
-# Conda configuration see https://conda.io/projects/conda/en/latest/configuration.html
-
-auto_update_conda: false
-show_channel_urls: true
-channels:
-  - conda-forge

jupyter_server_config.py

@@ -1,57 +0,0 @@
-# Copyright (c) Jupyter Development Team.
-# Distributed under the terms of the Modified BSD License.
-# mypy: ignore-errors
-import os
-import stat
-import subprocess
-
-from jupyter_core.paths import jupyter_data_dir
-
-c = get_config()  # noqa: F821
-c.ServerApp.ip = "0.0.0.0"
-c.ServerApp.port = 8888
-c.ServerApp.open_browser = False
-
-# https://github.com/jupyter/notebook/issues/3130
-c.FileContentsManager.delete_to_trash = False
-
-# Generate a self-signed certificate
-OPENSSL_CONFIG = """\
-[req]
-distinguished_name = req_distinguished_name
-[req_distinguished_name]
-"""
-if "GEN_CERT" in os.environ:
-    dir_name = jupyter_data_dir()
-    pem_file = os.path.join(dir_name, "notebook.pem")
-    os.makedirs(dir_name, exist_ok=True)
-
-    # Generate an openssl.cnf file to set the distinguished name
-    cnf_file = os.path.join(os.getenv("CONDA_DIR", "/usr/lib"), "ssl", "openssl.cnf")
-    if not os.path.isfile(cnf_file):
-        with open(cnf_file, "w") as fh:
-            fh.write(OPENSSL_CONFIG)
-
-    # Generate a certificate if one doesn't exist on disk
-    subprocess.check_call(
-        [
-            "openssl",
-            "req",
-            "-new",
-            "-newkey=rsa:2048",
-            "-days=365",
-            "-nodes",
-            "-x509",
-            "-subj=/C=XX/ST=XX/L=XX/O=generated/CN=generated",
-            f"-keyout={pem_file}",
-            f"-out={pem_file}",
-        ]
-    )
-    # Restrict access to the file
-    os.chmod(pem_file, stat.S_IRUSR | stat.S_IWUSR)
-    c.ServerApp.certfile = pem_file
-
-# Change default umask for all subprocesses of the notebook server if set in
-# the environment
-if "NB_UMASK" in os.environ:
-    os.umask(int(os.environ["NB_UMASK"], 8))

old.woodpecker.yml

@@ -1,13 +0,0 @@
-pipeline:
-  publish-container:
-    image: woodpeckerci/plugin-docker-buildx:2.1.0
-    secrets: [ docker_username, docker_password ]
-    group: docker
-    environment:
-     - CONDA_CUDA_OVERRIDE=11.2
-     - NVIDIA_VISIBLE_DEVICES=all
-    settings:
-      registry: https://git.sandbox.iuk.hdm-stuttgart.de
-      repo: git.sandbox.iuk.hdm-stuttgart.de/grosse/jupyterlab-datascience-gpu
-      dockerfile: Dockerfile
-      tags: latest

old/Dockerfile

@@ -1,393 +0,0 @@
-ARG NVIDIA_IMAGE=nvcr.io/nvidia/tensorflow:22.12-tf2-py3
-
-FROM ${NVIDIA_IMAGE}
-############################################################################
-#################### Dependency: jupyter/base-image ########################
-############################################################################
-
-#### copied from https://github.com/jupyter/docker-stacks/tree/main/docker-stacks-foundation
-
-# Copyright (c) Jupyter Development Team.
-# Distributed under the terms of the Modified BSD License.
-
-# Ubuntu 22.04 (jammy)
-# https://hub.docker.com/_/ubuntu/tags?page=1&name=jammy
-ARG ROOT_CONTAINER=ubuntu:22.04
-
-
-LABEL maintainer="Jupyter Project <jupyter@googlegroups.com>"
-ARG NB_USER="jovyan"
-ARG NB_UID="1000"
-ARG NB_GID="100"
-
-# Fix: https://github.com/hadolint/hadolint/wiki/DL4006
-# Fix: https://github.com/koalaman/shellcheck/wiki/SC3014
-SHELL ["/bin/bash", "-o", "pipefail", "-c"]
-
-USER root
-
-# Install all OS dependencies for notebook server that starts but lacks all
-# features (e.g., download as all possible file formats)
-ENV DEBIAN_FRONTEND noninteractive
-RUN apt-get update --yes && \
-    # - apt-get upgrade is run to patch known vulnerabilities in apt-get packages as
-    #   the ubuntu base image is rebuilt too seldom sometimes (less than once a month)
-    apt-get upgrade --yes && \
-    apt-get install --yes --no-install-recommends \
-    # - bzip2 is necessary to extract the micromamba executable.
-    bzip2 \
-    ca-certificates \
-    locales \
-    sudo \
-    # - tini is installed as a helpful container entrypoint that reaps zombie
-    #   processes and such of the actual executable we want to start, see
-    #   https://github.com/krallin/tini#why-tini for details.
-    tini \
-    wget && \
-    apt-get clean && rm -rf /var/lib/apt/lists/* && \
-    echo "en_US.UTF-8 UTF-8" > /etc/locale.gen && \
-    locale-gen
-
-# Configure environment
-ENV CONDA_DIR=/opt/conda \
-    SHELL=/bin/bash \
-    NB_USER="${NB_USER}" \
-    NB_UID=${NB_UID} \
-    NB_GID=${NB_GID} \
-    LC_ALL=en_US.UTF-8 \
-    LANG=en_US.UTF-8 \
-    LANGUAGE=en_US.UTF-8
-ENV PATH="${CONDA_DIR}/bin:${PATH}" \
-    HOME="/home/${NB_USER}"
-
-# Copy a script that we will use to correct permissions after running certain commands
-COPY fix-permissions /usr/local/bin/fix-permissions
-RUN chmod a+rx /usr/local/bin/fix-permissions
-
-# Enable prompt color in the skeleton .bashrc before creating the default NB_USER
-# hadolint ignore=SC2016
-RUN sed -i 's/^#force_color_prompt=yes/force_color_prompt=yes/' /etc/skel/.bashrc && \
-   # Add call to conda init script see https://stackoverflow.com/a/58081608/4413446
-   echo 'eval "$(command conda shell.bash hook 2> /dev/null)"' >> /etc/skel/.bashrc
-
-# Create NB_USER with name jovyan user with UID=1000 and in the 'users' group
-# and make sure these dirs are writable by the `users` group.
-RUN echo "auth requisite pam_deny.so" >> /etc/pam.d/su && \
-    sed -i.bak -e 's/^%admin/#%admin/' /etc/sudoers && \
-    sed -i.bak -e 's/^%sudo/#%sudo/' /etc/sudoers && \
-    useradd -l -m -s /bin/bash -N -u "${NB_UID}" "${NB_USER}" && \
-    mkdir -p "${CONDA_DIR}" && \
-    chown "${NB_USER}:${NB_GID}" "${CONDA_DIR}" && \
-    chmod g+w /etc/passwd && \
-    fix-permissions "${HOME}" && \
-    fix-permissions "${CONDA_DIR}"
-
-USER ${NB_UID}
-
-# Pin python version here, or set it to "default"
-ARG PYTHON_VERSION=3.10
-
-# Setup work directory for backward-compatibility
-RUN mkdir "/home/${NB_USER}/work" && \
-    fix-permissions "/home/${NB_USER}"
-
-# Download and install Micromamba, and initialize Conda prefix.
-#   <https://github.com/mamba-org/mamba#micromamba>
-#   Similar projects using Micromamba:
-#     - Micromamba-Docker: <https://github.com/mamba-org/micromamba-docker>
-#     - repo2docker: <https://github.com/jupyterhub/repo2docker>
-# Install Python, Mamba and jupyter_core
-# Cleanup temporary files and remove Micromamba
-# Correct permissions
-# Do all this in a single RUN command to avoid duplicating all of the
-# files across image layers when the permissions change
-
-COPY --chown="${NB_UID}:${NB_GID}" initial-condarc "${CONDA_DIR}/.condarc"
-WORKDIR /tmp
-RUN set -x && \
-    arch=$(uname -m) && \
-    if [ "${arch}" = "x86_64" ]; then \
-        # Should be simpler, see <https://github.com/mamba-org/mamba/issues/1437>
-        arch="64"; \
-    fi && \
-    wget -qO /tmp/micromamba.tar.bz2 \
-        "https://micromamba.snakepit.net/api/micromamba/linux-${arch}/latest" && \
-    tar -xvjf /tmp/micromamba.tar.bz2 --strip-components=1 bin/micromamba && \
-    rm /tmp/micromamba.tar.bz2 && \
-    PYTHON_SPECIFIER="python=${PYTHON_VERSION}" && \
-    if [[ "${PYTHON_VERSION}" == "default" ]]; then PYTHON_SPECIFIER="python"; fi && \
-    # Install the packages
-    ./micromamba install \
-        --root-prefix="${CONDA_DIR}" \
-        --prefix="${CONDA_DIR}" \
-        --yes \
-        "${PYTHON_SPECIFIER}" \
-        'mamba' \
-        'jupyter_core' && \
-    rm micromamba && \
-    # Pin major.minor version of python
-    mamba list python | grep '^python ' | tr -s ' ' | cut -d ' ' -f 1,2 >> "${CONDA_DIR}/conda-meta/pinned" && \
-    mamba clean --all -f -y && \
-    fix-permissions "${CONDA_DIR}" && \
-    fix-permissions "/home/${NB_USER}"
-
-EXPOSE 8888
-
-# Configure container startup
-ENTRYPOINT ["tini", "-g", "--"]
-CMD ["start-notebook.sh"]
-
-# Copy local files as late as possible to avoid cache busting
-COPY start.sh start-notebook.sh start-singleuser.sh /usr/local/bin/
-# Currently need to have both jupyter_notebook_config and jupyter_server_config to support classic and lab
-COPY jupyter_server_config.py /etc/jupyter/
-
-# Fix permissions on /etc/jupyter as root
-USER root
-
-# Legacy for Jupyter Notebook Server, see: [#1205](https://github.com/jupyter/docker-stacks/issues/1205)
-RUN sed -re "s/c.ServerApp/c.NotebookApp/g" \
-    /etc/jupyter/jupyter_server_config.py > /etc/jupyter/jupyter_notebook_config.py && \
-    fix-permissions /etc/jupyter/
-
-# HEALTHCHECK documentation: https://docs.docker.com/engine/reference/builder/#healthcheck
-# This healtcheck works well for `lab`, `notebook`, `nbclassic`, `server` and `retro` jupyter commands
-# https://github.com/jupyter/docker-stacks/issues/915#issuecomment-1068528799
-HEALTHCHECK  --interval=15s --timeout=3s --start-period=5s --retries=3 \
-    CMD wget -O- --no-verbose --tries=1 --no-check-certificate \
-    http${GEN_CERT:+s}://localhost:8888${JUPYTERHUB_SERVICE_PREFIX:-/}api || exit 1
-
-# Switch back to jovyan to avoid accidental container runs as root
-USER ${NB_UID}
-
-WORKDIR "${HOME}"
-
-
-############################################################################
-################# Dependency: jupyter/minimal-notebook #####################
-############################################################################
-
-# Copyright (c) Jupyter Development Team.
-# Distributed under the terms of the Modified BSD License.
-ARG OWNER=jupyter
-
-LABEL maintainer="Jupyter Project <jupyter@googlegroups.com>"
-
-# Fix: https://github.com/hadolint/hadolint/wiki/DL4006
-# Fix: https://github.com/koalaman/shellcheck/wiki/SC3014
-SHELL ["/bin/bash", "-o", "pipefail", "-c"]
-
-USER root
-
-# Install all OS dependencies for fully functional notebook server
-RUN apt-get update --yes && \
-    apt-get install --yes --no-install-recommends \
-    # Common useful utilities
-    git \
-    nano-tiny \
-    tzdata \
-    unzip \
-    vim-tiny \
-    # Inkscape is installed to be able to convert SVG files
-    inkscape \
-    # git-over-ssh
-    openssh-client \
-    # less is needed to run help in R
-    # see: https://github.com/jupyter/docker-stacks/issues/1588
-    less \
-    # nbconvert dependencies
-    # https://nbconvert.readthedocs.io/en/latest/install.html#installing-tex
-    texlive-xetex \
-    texlive-fonts-recommended \
-    texlive-plain-generic && \
-    apt-get clean && rm -rf /var/lib/apt/lists/*
-
-# Create alternative for nano -> nano-tiny
-RUN update-alternatives --install /usr/bin/nano nano /bin/nano-tiny 10
-
-# Switch back to jovyan to avoid accidental container runs as root
-USER ${NB_UID}
-
-############################################################################
-################# Dependency: jupyter/scipy-notebook #######################
-############################################################################
-
-# Copyright (c) Jupyter Development Team.
-# Distributed under the terms of the Modified BSD License.
-ARG OWNER=jupyter
-
-LABEL maintainer="Jupyter Project <jupyter@googlegroups.com>"
-
-# Fix: https://github.com/hadolint/hadolint/wiki/DL4006
-# Fix: https://github.com/koalaman/shellcheck/wiki/SC3014
-SHELL ["/bin/bash", "-o", "pipefail", "-c"]
-
-USER root
-
-RUN apt-get update --yes && \
-    apt-get install --yes --no-install-recommends \
-    # for cython: https://cython.readthedocs.io/en/latest/src/quickstart/install.html
-    build-essential \
-    # for latex labels
-    cm-super \
-    dvipng \
-    # for matplotlib anim
-    ffmpeg && \
-    apt-get clean && rm -rf /var/lib/apt/lists/*
-
-USER ${NB_UID}
-
-# Install Python 3 packages
-RUN mamba install --quiet --yes \
-    'altair' \
-    'beautifulsoup4' \
-    'bokeh' \
-    'bottleneck' \
-    'cloudpickle' \
-    'conda-forge::blas=*=openblas' \
-    'cython' \
-    'dask' \
-    'dill' \
-    'h5py' \
-    'ipympl'\
-    'ipywidgets' \
-    'matplotlib-base' \
-    'numba' \
-    'numexpr' \
-    'pandas' \
-    'patsy' \
-    'protobuf' \
-    'pytables' \
-    'scikit-image' \
-    'scikit-learn' \
-    'scipy' \
-    'seaborn' \
-    'sqlalchemy' \
-    'statsmodels' \
-    'sympy' \
-    'widgetsnbextension'\
-    'xlrd' && \
-    mamba clean --all -f -y && \
-    fix-permissions "${CONDA_DIR}" && \
-    fix-permissions "/home/${NB_USER}"
-
-# Install facets which does not have a pip or conda package at the moment
-WORKDIR /tmp
-RUN git clone https://github.com/PAIR-code/facets.git && \
-    jupyter nbextension install facets/facets-dist/ --sys-prefix && \
-    rm -rf /tmp/facets && \
-    fix-permissions "${CONDA_DIR}" && \
-    fix-permissions "/home/${NB_USER}"
-
-# Import matplotlib the first time to build the font cache.
-ENV XDG_CACHE_HOME="/home/${NB_USER}/.cache/"
-
-RUN MPLBACKEND=Agg python -c "import matplotlib.pyplot" && \
-    fix-permissions "/home/${NB_USER}"
-
-USER ${NB_UID}
-
-WORKDIR "${HOME}"
-
-
-
-################ copied from https://github.com/iot-salzburg/gpu-jupyter/tree/master/src
-
-
-# LABEL authors="Christoph Schranz <christoph.schranz@salzburgresearch.at>, Mathematical Michael <consistentbayes@gmail.com>"
-
- #tensorflow 2.10.1 requires keras<2.11,>=2.10.0, but you have keras 2.11.0 
-
-# Install Tensorflow, check compatibility here:
-# https://www.tensorflow.org/install/source#gpu
-# installation via conda leads to errors in version 4.8.2
-RUN pip install --upgrade pip && \
-    pip install --no-cache-dir "tensorflow==2.11.0"
-RUN pip install --upgrade pip && \
-    pip install --no-cache-dir keras==2.11.0
-
-# Install PyTorch with dependencies
-RUN conda install --quiet --yes \
-    pyyaml mkl mkl-include setuptools cmake cffi typing && \
-    conda clean --all -f -y && \
-    fix-permissions $CONDA_DIR && \
-    fix-permissions /home/$NB_USER
-
-# Check compatibility here:
-# https://pytorch.org/get-started/locally/
-# Installation via conda leads to errors installing cudatoolkit=11.1
-RUN pip install --no-cache-dir torch torchvision torchaudio torchviz --extra-index-url https://download.pytorch.org/whl/cu116
-
-ENV CUDA_PATH=/opt/conda/
-
-USER root
-
-# Install nvtop to monitor the gpu tasks
-RUN apt-get update && \
-    apt-get install -y cmake libncurses5-dev libncursesw5-dev git && \
-    rm -rf /var/lib/apt/lists/*
-
-RUN git clone https://github.com/Syllo/nvtop.git /run/nvtop && \
-    mkdir -p /run/nvtop/build && cd /run/nvtop/build && \
-    (cmake .. -DNVML_RETRIEVE_HEADER_ONLINE=True 2> /dev/null || echo "cmake was not successful") && \
-    (make 2> /dev/null || echo "make was not successful") && \
-    (make install 2> /dev/null || echo "make install was not successful") && \
-    cd /tmp && rm -rf /tmp/nvtop
-
-RUN fix-permissions /home/$NB_USER
-
-USER $NB_UID
-
-
-  ############################################################################
-  ############################ Useful packages ###############################
-  ############################################################################
-  
-LABEL authors="Christoph Schranz <christoph.schranz@salzburgresearch.at>, Mathematical Michael <consistentbayes@gmail.com>"
-
-USER root
-
-RUN pip install --no-cache-dir ipyleaflet "plotly>=4.14.3" "ipywidgets>=7.5"
-RUN conda install -c conda-forge nodejs
-# Install important packages and Graphviz
-RUN set -ex \
- && buildDeps=' \
-    graphviz==0.19.1 \
-' \
- && apt-get update \
- && apt-get -y install htop apt-utils iputils-ping graphviz libgraphviz-dev openssh-client \
- && pip install --no-cache-dir $buildDeps
-
-# Install various extensions
-RUN fix-permissions $CONDA_DIR
-
-# RUN jupyter labextension install @jupyterlab/github
-# RUN pip install jupyterlab-git
-RUN pip install jupyterlab-drawio
-RUN jupyter nbextension enable --py --sys-prefix ipyleaflet
-
-RUN jupyter labextension install jupyterlab-plotly
-RUN jupyter labextension install @jupyter-widgets/jupyterlab-manager plotlywidget
-# RUN pip install --no-cache-dir jupyter-tabnine  --user && \
-#   jupyter nbextension install --py jupyter_tabnine --user && \
-#   jupyter nbextension enable --py jupyter_tabnine --user && \
-#   jupyter serverextension enable --py jupyter_tabnine --user
-RUN pip install --no-cache-dir jupyter_contrib_nbextensions \
-  jupyter_nbextensions_configurator rise
-#  jupyter nbextension enable codefolding/main
-RUN jupyter labextension install @ijmbarr/jupyterlab_spellchecker
-
-RUN fix-permissions /home/$NB_USER
-
-
-## add sandbox plugins
-RUN pip install --extra-index-url https://git.sandbox.iuk.hdm-stuttgart.de/api/packages/grosse/pypi/simple jupyterlab-sandbox-theme
-RUN pip install --extra-index-url https://git.sandbox.iuk.hdm-stuttgart.de/api/packages/grosse/pypi/simple jupyterlab-data-pool
-RUN pip install --extra-index-url https://git.sandbox.iuk.hdm-stuttgart.de/api/packages/grosse/pypi/simple jupyterlab-training
-RUN pip install --extra-index-url https://git.sandbox.iuk.hdm-stuttgart.de/api/packages/grosse/pypi/simple jupyterlab-synthetic-data
-
-# Switch back to jovyan to avoid accidental container runs as root
-USER $NB_UID
-
-# Copy jupyter_notebook_config.json
-#COPY jupyter_notebook_config.json /etc/jupyter/

old/jupyter_notebook_config.json

@@ -1,5 +0,0 @@
-{
-    "NotebookApp": {
-      "password": "sha1:3b4b6378355:642693b20f0a33bcad27b94293d0ed7db3408322"
-    }
-  }

old/start.sh

@@ -1,262 +0,0 @@
-#!/bin/bash
-# Copyright (c) Jupyter Development Team.
-# Distributed under the terms of the Modified BSD License.
-
-set -e
-
-# The _log function is used for everything this script wants to log. It will
-# always log errors and warnings, but can be silenced for other messages
-# by setting JUPYTER_DOCKER_STACKS_QUIET environment variable.
-_log () {
-    if [[ "$*" == "ERROR:"* ]] || [[ "$*" == "WARNING:"* ]] || [[ "${JUPYTER_DOCKER_STACKS_QUIET}" == "" ]]; then
-        echo "$@"
-    fi
-}
-_log "Entered start.sh with args:" "$@"
-
-# The run-hooks function looks for .sh scripts to source and executable files to
-# run within a passed directory.
-run-hooks () {
-    if [[ ! -d "${1}" ]] ; then
-        return
-    fi
-    _log "${0}: running hooks in ${1} as uid / gid: $(id -u) / $(id -g)"
-    for f in "${1}/"*; do
-        case "${f}" in
-            *.sh)
-                _log "${0}: running script ${f}"
-                # shellcheck disable=SC1090
-                source "${f}"
-                ;;
-            *)
-                if [[ -x "${f}" ]] ; then
-                    _log "${0}: running executable ${f}"
-                    "${f}"
-                else
-                    _log "${0}: ignoring non-executable ${f}"
-                fi
-                ;;
-        esac
-    done
-    _log "${0}: done running hooks in ${1}"
-}
-
-# A helper function to unset env vars listed in the value of the env var
-# JUPYTER_ENV_VARS_TO_UNSET.
-unset_explicit_env_vars () {
-    if [ -n "${JUPYTER_ENV_VARS_TO_UNSET}" ]; then
-        for env_var_to_unset in $(echo "${JUPYTER_ENV_VARS_TO_UNSET}" | tr ',' ' '); do
-            echo "Unset ${env_var_to_unset} due to JUPYTER_ENV_VARS_TO_UNSET"
-            unset "${env_var_to_unset}"
-        done
-        unset JUPYTER_ENV_VARS_TO_UNSET
-    fi
-}
-
-
-# Default to starting bash if no command was specified
-if [ $# -eq 0 ]; then
-    cmd=( "bash" )
-else
-    cmd=( "$@" )
-fi
-
-# NOTE: This hook will run as the user the container was started with!
-run-hooks /usr/local/bin/start-notebook.d
-
-# If the container started as the root user, then we have permission to refit
-# the jovyan user, and ensure file permissions, grant sudo rights, and such
-# things before we run the command passed to start.sh as the desired user
-# (NB_USER).
-#
-if [ "$(id -u)" == 0 ] ; then
-    # Environment variables:
-    # - NB_USER: the desired username and associated home folder
-    # - NB_UID: the desired user id
-    # - NB_GID: a group id we want our user to belong to
-    # - NB_GROUP: a group name we want for the group
-    # - GRANT_SUDO: a boolean ("1" or "yes") to grant the user sudo rights
-    # - CHOWN_HOME: a boolean ("1" or "yes") to chown the user's home folder
-    # - CHOWN_EXTRA: a comma separated list of paths to chown
-    # - CHOWN_HOME_OPTS / CHOWN_EXTRA_OPTS: arguments to the chown commands
-
-    # Refit the jovyan user to the desired the user (NB_USER)
-    if id jovyan &> /dev/null ; then
-        if ! usermod --home "/home/${NB_USER}" --login "${NB_USER}" jovyan 2>&1 | grep "no changes" > /dev/null; then
-            _log "Updated the jovyan user:"
-            _log "- username: jovyan       -> ${NB_USER}"
-            _log "- home dir: /home/jovyan -> /home/${NB_USER}"
-        fi
-    elif ! id -u "${NB_USER}" &> /dev/null; then
-        _log "ERROR: Neither the jovyan user or '${NB_USER}' exists. This could be the result of stopping and starting, the container with a different NB_USER environment variable."
-        exit 1
-    fi
-    # Ensure the desired user (NB_USER) gets its desired user id (NB_UID) and is
-    # a member of the desired group (NB_GROUP, NB_GID)
-    if [ "${NB_UID}" != "$(id -u "${NB_USER}")" ] || [ "${NB_GID}" != "$(id -g "${NB_USER}")" ]; then
-        _log "Update ${NB_USER}'s UID:GID to ${NB_UID}:${NB_GID}"
-        # Ensure the desired group's existence
-        if [ "${NB_GID}" != "$(id -g "${NB_USER}")" ]; then
-            groupadd --force --gid "${NB_GID}" --non-unique "${NB_GROUP:-${NB_USER}}"
-        fi
-        # Recreate the desired user as we want it
-        userdel "${NB_USER}"
-        useradd --home "/home/${NB_USER}" --uid "${NB_UID}" --gid "${NB_GID}" --groups 100 --no-log-init "${NB_USER}"
-    fi
-
-    # Move or symlink the jovyan home directory to the desired users home
-    # directory if it doesn't already exist, and update the current working
-    # directory to the new location if needed.
-    if [[ "${NB_USER}" != "jovyan" ]]; then
-        if [[ ! -e "/home/${NB_USER}" ]]; then
-            _log "Attempting to copy /home/jovyan to /home/${NB_USER}..."
-            mkdir "/home/${NB_USER}"
-            if cp -a /home/jovyan/. "/home/${NB_USER}/"; then
-                _log "Success!"
-            else
-                _log "Failed to copy data from /home/jovyan to /home/${NB_USER}!"
-                _log "Attempting to symlink /home/jovyan to /home/${NB_USER}..."
-                if ln -s /home/jovyan "/home/${NB_USER}"; then
-                    _log "Success creating symlink!"
-                else
-                    _log "ERROR: Failed copy data from /home/jovyan to /home/${NB_USER} or to create symlink!"
-                    exit 1
-                fi
-            fi
-        fi
-        # Ensure the current working directory is updated to the new path
-        if [[ "${PWD}/" == "/home/jovyan/"* ]]; then
-            new_wd="/home/${NB_USER}/${PWD:13}"
-            _log "Changing working directory to ${new_wd}"
-            cd "${new_wd}"
-        fi
-    fi
-
-    # Optionally ensure the desired user get filesystem ownership of it's home
-    # folder and/or additional folders
-    if [[ "${CHOWN_HOME}" == "1" || "${CHOWN_HOME}" == "yes" ]]; then
-        _log "Ensuring /home/${NB_USER} is owned by ${NB_UID}:${NB_GID} ${CHOWN_HOME_OPTS:+(chown options: ${CHOWN_HOME_OPTS})}"
-        # shellcheck disable=SC2086
-        chown ${CHOWN_HOME_OPTS} "${NB_UID}:${NB_GID}" "/home/${NB_USER}"
-    fi
-    if [ -n "${CHOWN_EXTRA}" ]; then
-        for extra_dir in $(echo "${CHOWN_EXTRA}" | tr ',' ' '); do
-            _log "Ensuring ${extra_dir} is owned by ${NB_UID}:${NB_GID} ${CHOWN_EXTRA_OPTS:+(chown options: ${CHOWN_EXTRA_OPTS})}"
-            # shellcheck disable=SC2086
-            chown ${CHOWN_EXTRA_OPTS} "${NB_UID}:${NB_GID}" "${extra_dir}"
-        done
-    fi
-
-    # Update potentially outdated environment variables since image build
-    export XDG_CACHE_HOME="/home/${NB_USER}/.cache"
-
-    # Prepend ${CONDA_DIR}/bin to sudo secure_path
-    sed -r "s#Defaults\s+secure_path\s*=\s*\"?([^\"]+)\"?#Defaults secure_path=\"${CONDA_DIR}/bin:\1\"#" /etc/sudoers | grep secure_path > /etc/sudoers.d/path
-
-    # Optionally grant passwordless sudo rights for the desired user
-    if [[ "$GRANT_SUDO" == "1" || "$GRANT_SUDO" == "yes" ]]; then
-        _log "Granting ${NB_USER} passwordless sudo rights!"
-        echo "${NB_USER} ALL=(ALL) NOPASSWD:ALL" >> /etc/sudoers.d/added-by-start-script
-    fi
-
-    # NOTE: This hook is run as the root user!
-    run-hooks /usr/local/bin/before-notebook.d
-
-    unset_explicit_env_vars
-    _log "Running as ${NB_USER}:" "${cmd[@]}"
-    exec sudo --preserve-env --set-home --user "${NB_USER}" \
-        PATH="${PATH}" \
-        PYTHONPATH="${PYTHONPATH:-}" \
-        "${cmd[@]}"
-        # Notes on how we ensure that the environment that this container is started
-        # with is preserved (except vars listed in JUPYTER_ENV_VARS_TO_UNSET) when
-        # we transition from running as root to running as NB_USER.
-        #
-        # - We use `sudo` to execute the command as NB_USER. What then
-        #   happens to the environment will be determined by configuration in
-        #   /etc/sudoers and /etc/sudoers.d/* as well as flags we pass to the sudo
-        #   command. The behavior can be inspected with `sudo -V` run as root.
-        #
-        #   ref: `man sudo`    https://linux.die.net/man/8/sudo
-        #   ref: `man sudoers` https://www.sudo.ws/man/1.8.15/sudoers.man.html
-        #
-        # - We use the `--preserve-env` flag to pass through most environment
-        #   variables, but understand that exceptions are caused by the sudoers
-        #   configuration: `env_delete` and `env_check`.
-        #
-        # - We use the `--set-home` flag to set the HOME variable appropriately.
-        #
-        # - To reduce the default list of variables deleted by sudo, we could have
-        #   used `env_delete` from /etc/sudoers. It has higher priority than the
-        #   `--preserve-env` flag and the `env_keep` configuration.
-        #
-        # - We preserve PATH and PYTHONPATH explicitly. Note however that sudo
-        #   resolves `${cmd[@]}` using the "secure_path" variable we modified
-        #   above in /etc/sudoers.d/path. Thus PATH is irrelevant to how the above
-        #   sudo command resolves the path of `${cmd[@]}`. The PATH will be relevant
-        #   for resolving paths of any subprocesses spawned by `${cmd[@]}`.
-
-# The container didn't start as the root user, so we will have to act as the
-# user we started as.
-else
-    # Warn about misconfiguration of: granting sudo rights
-    if [[ "${GRANT_SUDO}" == "1" || "${GRANT_SUDO}" == "yes" ]]; then
-        _log "WARNING: container must be started as root to grant sudo permissions!"
-    fi
-
-    JOVYAN_UID="$(id -u jovyan 2>/dev/null)"  # The default UID for the jovyan user
-    JOVYAN_GID="$(id -g jovyan 2>/dev/null)"  # The default GID for the jovyan user
-
-    # Attempt to ensure the user uid we currently run as has a named entry in
-    # the /etc/passwd file, as it avoids software crashing on hard assumptions
-    # on such entry. Writing to the /etc/passwd was allowed for the root group
-    # from the Dockerfile during build.
-    #
-    # ref: https://github.com/jupyter/docker-stacks/issues/552
-    if ! whoami &> /dev/null; then
-        _log "There is no entry in /etc/passwd for our UID=$(id -u). Attempting to fix..."
-        if [[ -w /etc/passwd ]]; then
-            _log "Renaming old jovyan user to nayvoj ($(id -u jovyan):$(id -g jovyan))"
-
-            # We cannot use "sed --in-place" since sed tries to create a temp file in
-            # /etc/ and we may not have write access. Apply sed on our own temp file:
-            sed --expression="s/^jovyan:/nayvoj:/" /etc/passwd > /tmp/passwd
-            echo "${NB_USER}:x:$(id -u):$(id -g):,,,:/home/jovyan:/bin/bash" >> /tmp/passwd
-            cat /tmp/passwd > /etc/passwd
-            rm /tmp/passwd
-
-            _log "Added new ${NB_USER} user ($(id -u):$(id -g)). Fixed UID!"
-
-            if [[ "${NB_USER}" != "jovyan" ]]; then
-                _log "WARNING: user is ${NB_USER} but home is /home/jovyan. You must run as root to rename the home directory!"
-            fi
-        else
-            _log "WARNING: unable to fix missing /etc/passwd entry because we don't have write permission. Try setting gid=0 with \"--user=$(id -u):0\"."
-        fi
-    fi
-
-    # Warn about misconfiguration of: desired username, user id, or group id.
-    # A misconfiguration occurs when the user modifies the default values of
-    # NB_USER, NB_UID, or NB_GID, but we cannot update those values because we
-    # are not root.
-    if [[ "${NB_USER}" != "jovyan" && "${NB_USER}" != "$(id -un)" ]]; then
-        _log "WARNING: container must be started as root to change the desired user's name with NB_USER=\"${NB_USER}\"!"
-    fi
-    if [[ "${NB_UID}" != "${JOVYAN_UID}" && "${NB_UID}" != "$(id -u)" ]]; then
-        _log "WARNING: container must be started as root to change the desired user's id with NB_UID=\"${NB_UID}\"!"
-    fi
-    if [[ "${NB_GID}" != "${JOVYAN_GID}" && "${NB_GID}" != "$(id -g)" ]]; then
-        _log "WARNING: container must be started as root to change the desired user's group id with NB_GID=\"${NB_GID}\"!"
-    fi
-
-    # Warn if the user isn't able to write files to ${HOME}
-    if [[ ! -w /home/jovyan ]]; then
-        _log "WARNING: no write access to /home/jovyan. Try starting the container with group 'users' (100), e.g. using \"--group-add=users\"."
-    fi
-
-    # NOTE: This hook is run as the user we started the container as!
-    run-hooks /usr/local/bin/before-notebook.d
-    unset_explicit_env_vars
-    _log "Executing the command:" "${cmd[@]}"
-    exec "${cmd[@]}"
-fi

start-notebook.sh

@@ -1,22 +0,0 @@
-#!/bin/bash
-# Copyright (c) Jupyter Development Team.
-# Distributed under the terms of the Modified BSD License.
-
-set -e
-
-# The Jupyter command to launch
-# JupyterLab by default
-DOCKER_STACKS_JUPYTER_CMD="${DOCKER_STACKS_JUPYTER_CMD:=lab}"
-
-if [[ -n "${JUPYTERHUB_API_TOKEN}" ]]; then
-    echo "WARNING: using start-singleuser.sh instead of start-notebook.sh to start a server associated with JupyterHub."
-    exec /usr/local/bin/start-singleuser.sh "$@"
-fi
-
-wrapper=""
-if [[ "${RESTARTABLE}" == "yes" ]]; then
-    wrapper="run-one-constantly"
-fi
-
-# shellcheck disable=SC1091,SC2086
-exec /usr/local/bin/start.sh ${wrapper} jupyter ${DOCKER_STACKS_JUPYTER_CMD} ${NOTEBOOK_ARGS} "$@"

start-singleuser.sh

@@ -1,13 +0,0 @@
-#!/bin/bash
-# Copyright (c) Jupyter Development Team.
-# Distributed under the terms of the Modified BSD License.
-
-set -e
-
-# set default ip to 0.0.0.0
-if [[ "${NOTEBOOK_ARGS} $*" != *"--ip="* ]]; then
-    NOTEBOOK_ARGS="--ip=0.0.0.0 ${NOTEBOOK_ARGS}"
-fi
-
-# shellcheck disable=SC1091,SC2086
-. /usr/local/bin/start.sh jupyterhub-singleuser ${NOTEBOOK_ARGS} "$@"