ARG NVIDIA_IMAGE=nvcr.io/nvidia/tensorflow:22.12-tf2-py3 FROM ${NVIDIA_IMAGE} ############################################################################ #################### Dependency: jupyter/base-image ######################## ############################################################################ #### copied from https://github.com/jupyter/docker-stacks/tree/main/docker-stacks-foundation # Copyright (c) Jupyter Development Team. # Distributed under the terms of the Modified BSD License. # Ubuntu 22.04 (jammy) # https://hub.docker.com/_/ubuntu/tags?page=1&name=jammy ARG ROOT_CONTAINER=ubuntu:22.04 LABEL maintainer="Jupyter Project " ARG NB_USER="jovyan" ARG NB_UID="1000" ARG NB_GID="100" # Fix: https://github.com/hadolint/hadolint/wiki/DL4006 # Fix: https://github.com/koalaman/shellcheck/wiki/SC3014 SHELL ["/bin/bash", "-o", "pipefail", "-c"] USER root # Install all OS dependencies for notebook server that starts but lacks all # features (e.g., download as all possible file formats) ENV DEBIAN_FRONTEND noninteractive RUN apt-get update --yes && \ # - apt-get upgrade is run to patch known vulnerabilities in apt-get packages as # the ubuntu base image is rebuilt too seldom sometimes (less than once a month) apt-get upgrade --yes && \ apt-get install --yes --no-install-recommends \ # - bzip2 is necessary to extract the micromamba executable. bzip2 \ ca-certificates \ locales \ sudo \ # - tini is installed as a helpful container entrypoint that reaps zombie # processes and such of the actual executable we want to start, see # https://github.com/krallin/tini#why-tini for details. tini \ wget && \ apt-get clean && rm -rf /var/lib/apt/lists/* && \ echo "en_US.UTF-8 UTF-8" > /etc/locale.gen && \ locale-gen # Configure environment ENV CONDA_DIR=/opt/conda \ SHELL=/bin/bash \ NB_USER="${NB_USER}" \ NB_UID=${NB_UID} \ NB_GID=${NB_GID} \ LC_ALL=en_US.UTF-8 \ LANG=en_US.UTF-8 \ LANGUAGE=en_US.UTF-8 ENV PATH="${CONDA_DIR}/bin:${PATH}" \ HOME="/home/${NB_USER}" # Copy a script that we will use to correct permissions after running certain commands COPY fix-permissions /usr/local/bin/fix-permissions RUN chmod a+rx /usr/local/bin/fix-permissions # Enable prompt color in the skeleton .bashrc before creating the default NB_USER # hadolint ignore=SC2016 RUN sed -i 's/^#force_color_prompt=yes/force_color_prompt=yes/' /etc/skel/.bashrc && \ # Add call to conda init script see https://stackoverflow.com/a/58081608/4413446 echo 'eval "$(command conda shell.bash hook 2> /dev/null)"' >> /etc/skel/.bashrc # Create NB_USER with name jovyan user with UID=1000 and in the 'users' group # and make sure these dirs are writable by the `users` group. RUN echo "auth requisite pam_deny.so" >> /etc/pam.d/su && \ sed -i.bak -e 's/^%admin/#%admin/' /etc/sudoers && \ sed -i.bak -e 's/^%sudo/#%sudo/' /etc/sudoers && \ useradd -l -m -s /bin/bash -N -u "${NB_UID}" "${NB_USER}" && \ mkdir -p "${CONDA_DIR}" && \ chown "${NB_USER}:${NB_GID}" "${CONDA_DIR}" && \ chmod g+w /etc/passwd && \ fix-permissions "${HOME}" && \ fix-permissions "${CONDA_DIR}" USER ${NB_UID} # Pin python version here, or set it to "default" ARG PYTHON_VERSION=3.10 # Setup work directory for backward-compatibility RUN mkdir "/home/${NB_USER}/work" && \ fix-permissions "/home/${NB_USER}" # Download and install Micromamba, and initialize Conda prefix. # # Similar projects using Micromamba: # - Micromamba-Docker: # - repo2docker: # Install Python, Mamba and jupyter_core # Cleanup temporary files and remove Micromamba # Correct permissions # Do all this in a single RUN command to avoid duplicating all of the # files across image layers when the permissions change COPY --chown="${NB_UID}:${NB_GID}" initial-condarc "${CONDA_DIR}/.condarc" WORKDIR /tmp RUN set -x && \ arch=$(uname -m) && \ if [ "${arch}" = "x86_64" ]; then \ # Should be simpler, see arch="64"; \ fi && \ wget -qO /tmp/micromamba.tar.bz2 \ "https://micromamba.snakepit.net/api/micromamba/linux-${arch}/latest" && \ tar -xvjf /tmp/micromamba.tar.bz2 --strip-components=1 bin/micromamba && \ rm /tmp/micromamba.tar.bz2 && \ PYTHON_SPECIFIER="python=${PYTHON_VERSION}" && \ if [[ "${PYTHON_VERSION}" == "default" ]]; then PYTHON_SPECIFIER="python"; fi && \ # Install the packages ./micromamba install \ --root-prefix="${CONDA_DIR}" \ --prefix="${CONDA_DIR}" \ --yes \ "${PYTHON_SPECIFIER}" \ 'mamba' \ 'jupyter_core' && \ rm micromamba && \ # Pin major.minor version of python mamba list python | grep '^python ' | tr -s ' ' | cut -d ' ' -f 1,2 >> "${CONDA_DIR}/conda-meta/pinned" && \ mamba clean --all -f -y && \ fix-permissions "${CONDA_DIR}" && \ fix-permissions "/home/${NB_USER}" # Configure container startup ENTRYPOINT ["tini", "-g", "--"] CMD ["start.sh"] # Copy local files as late as possible to avoid cache busting COPY start.sh /usr/local/bin/ # Switch back to jovyan to avoid accidental container runs as root USER ${NB_UID} WORKDIR "${HOME}" ############################################################################ ################# Dependency: jupyter/minimal-notebook ##################### ############################################################################ # Copyright (c) Jupyter Development Team. # Distributed under the terms of the Modified BSD License. ARG OWNER=jupyter LABEL maintainer="Jupyter Project " # Fix: https://github.com/hadolint/hadolint/wiki/DL4006 # Fix: https://github.com/koalaman/shellcheck/wiki/SC3014 SHELL ["/bin/bash", "-o", "pipefail", "-c"] USER root # Install all OS dependencies for fully functional notebook server RUN apt-get update --yes && \ apt-get install --yes --no-install-recommends \ # Common useful utilities git \ nano-tiny \ tzdata \ unzip \ vim-tiny \ # Inkscape is installed to be able to convert SVG files inkscape \ # git-over-ssh openssh-client \ # less is needed to run help in R # see: https://github.com/jupyter/docker-stacks/issues/1588 less \ # nbconvert dependencies # https://nbconvert.readthedocs.io/en/latest/install.html#installing-tex texlive-xetex \ texlive-fonts-recommended \ texlive-plain-generic && \ apt-get clean && rm -rf /var/lib/apt/lists/* # Create alternative for nano -> nano-tiny RUN update-alternatives --install /usr/bin/nano nano /bin/nano-tiny 10 # Switch back to jovyan to avoid accidental container runs as root USER ${NB_UID} ############################################################################ ################# Dependency: jupyter/scipy-notebook ####################### ############################################################################ # Copyright (c) Jupyter Development Team. # Distributed under the terms of the Modified BSD License. ARG OWNER=jupyter LABEL maintainer="Jupyter Project " # Fix: https://github.com/hadolint/hadolint/wiki/DL4006 # Fix: https://github.com/koalaman/shellcheck/wiki/SC3014 SHELL ["/bin/bash", "-o", "pipefail", "-c"] USER root RUN apt-get update --yes && \ apt-get install --yes --no-install-recommends \ # for cython: https://cython.readthedocs.io/en/latest/src/quickstart/install.html build-essential \ # for latex labels cm-super \ dvipng \ # for matplotlib anim ffmpeg && \ apt-get clean && rm -rf /var/lib/apt/lists/* USER ${NB_UID} # Install Python 3 packages RUN mamba install --quiet --yes \ 'altair' \ 'beautifulsoup4' \ 'bokeh' \ 'bottleneck' \ 'cloudpickle' \ 'conda-forge::blas=*=openblas' \ 'cython' \ 'dask' \ 'dill' \ 'h5py' \ 'ipympl'\ 'ipywidgets' \ 'matplotlib-base' \ 'numba' \ 'numexpr' \ 'pandas' \ 'patsy' \ 'protobuf' \ 'pytables' \ 'scikit-image' \ 'scikit-learn' \ 'scipy' \ 'seaborn' \ 'sqlalchemy' \ 'statsmodels' \ 'sympy' \ 'widgetsnbextension'\ 'xlrd' && \ mamba clean --all -f -y && \ fix-permissions "${CONDA_DIR}" && \ fix-permissions "/home/${NB_USER}" # Install facets which does not have a pip or conda package at the moment WORKDIR /tmp RUN git clone https://github.com/PAIR-code/facets.git && \ jupyter nbextension install facets/facets-dist/ --sys-prefix && \ rm -rf /tmp/facets && \ fix-permissions "${CONDA_DIR}" && \ fix-permissions "/home/${NB_USER}" # Import matplotlib the first time to build the font cache. ENV XDG_CACHE_HOME="/home/${NB_USER}/.cache/" RUN MPLBACKEND=Agg python -c "import matplotlib.pyplot" && \ fix-permissions "/home/${NB_USER}" USER ${NB_UID} WORKDIR "${HOME}" ################ copied from https://github.com/iot-salzburg/gpu-jupyter/tree/master/src # LABEL authors="Christoph Schranz , Mathematical Michael " # Install Tensorflow, check compatibility here: # https://www.tensorflow.org/install/source#gpu # installation via conda leads to errors in version 4.8.2 RUN pip install --upgrade pip && \ pip install --no-cache-dir "tensorflow==2.10.1" RUN pip install --upgrade pip && \ pip install --no-cache-dir keras==2.11.0 # Install PyTorch with dependencies RUN conda install --quiet --yes \ pyyaml mkl mkl-include setuptools cmake cffi typing && \ conda clean --all -f -y && \ fix-permissions $CONDA_DIR && \ fix-permissions /home/$NB_USER # Check compatibility here: # https://pytorch.org/get-started/locally/ # Installation via conda leads to errors installing cudatoolkit=11.1 RUN pip install --no-cache-dir torch torchvision torchaudio torchviz --extra-index-url https://download.pytorch.org/whl/cu116 ENV CUDA_PATH=/opt/conda/ USER root # Install nvtop to monitor the gpu tasks RUN apt-get update && \ apt-get install -y cmake libncurses5-dev libncursesw5-dev git && \ rm -rf /var/lib/apt/lists/* RUN git clone https://github.com/Syllo/nvtop.git /run/nvtop && \ mkdir -p /run/nvtop/build && cd /run/nvtop/build && \ (cmake .. -DNVML_RETRIEVE_HEADER_ONLINE=True 2> /dev/null || echo "cmake was not successful") && \ (make 2> /dev/null || echo "make was not successful") && \ (make install 2> /dev/null || echo "make install was not successful") && \ cd /tmp && rm -rf /tmp/nvtop RUN fix-permissions /home/$NB_USER USER $NB_UID ############################################################################ ############################ Useful packages ############################### ############################################################################ LABEL authors="Christoph Schranz , Mathematical Michael " USER root RUN pip install --no-cache-dir ipyleaflet "plotly>=4.14.3" "ipywidgets>=7.5" # Install important packages and Graphviz RUN set -ex \ && buildDeps=' \ graphviz==0.19.1 \ ' \ && apt-get update \ && apt-get -y install htop apt-utils iputils-ping graphviz libgraphviz-dev openssh-client \ && pip install --no-cache-dir $buildDeps # Install various extensions RUN fix-permissions $CONDA_DIR # RUN jupyter labextension install @jupyterlab/github # RUN pip install jupyterlab-git RUN pip install jupyterlab-drawio RUN jupyter nbextension enable --py --sys-prefix ipyleaflet RUN jupyter labextension install jupyterlab-plotly RUN jupyter labextension install @jupyter-widgets/jupyterlab-manager plotlywidget # RUN pip install --no-cache-dir jupyter-tabnine --user && \ # jupyter nbextension install --py jupyter_tabnine --user && \ # jupyter nbextension enable --py jupyter_tabnine --user && \ # jupyter serverextension enable --py jupyter_tabnine --user RUN pip install --no-cache-dir jupyter_contrib_nbextensions \ jupyter_nbextensions_configurator rise # jupyter nbextension enable codefolding/main RUN jupyter labextension install @ijmbarr/jupyterlab_spellchecker RUN fix-permissions /home/$NB_USER # Switch back to jovyan to avoid accidental container runs as root USER $NB_UID # Copy jupyter_notebook_config.json #COPY jupyter_notebook_config.json /etc/jupyter/